robust multiarray average (rma) algorithm (Broad Institute Inc)
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Broad Institute Inc
robust multiarray average (rma) algorithm
Robust Multiarray Average (Rma) Algorithm, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/robust+multiarray+average+(rma)+algorithm/robust+multiarray+average++rma++algorithm/pmc06263165-362-10-16
Average 90 stars, based on 1 article reviews
Robust Multiarray Average (Rma) Algorithm, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/robust+multiarray+average+(rma)+algorithm/robust+multiarray+average++rma++algorithm/pmc06263165-362-10-16
Average 90 stars, based on 1 article reviews
robust multiarray average (rma) algorithm - by Bioz Stars,
2026-10
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Expressing:Article Title: TODRA , a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51 , and Enhances RAD51-Dependent DSB (Double Strand Break) Repair Article Snippet: Raw data was analyzed using the robust multiarray average (RMA) algorithm (Affymetrix Expression Console and Partek Genomics Suite 6.4)[ ]. Article Title: miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2 . Article Snippet: 2 Reversing epithelial-to-mesenchymal transition (EMT) in cancer cells has been widely considered as an approach to combat cancer progression and therapeutic resistance, but a limited number of broadly comprehensive investigations of microRNAs involved in this process have been conducted.. In this study, we screened a library of 1120 microRNA for their ability to transcriptionally activate the E-cadherin gene CDH1 in a promoter reporter assay as a measure of EMT reversal.. By this approach, we defined miR-520f as a novel EMT-reversing microRNA. miR-520f expression was sufficient to restore endogenous levels of E-cadherin in cancer cell lines exhibiting strong or intermediate mesenchymal phenotypes. Article Title: Functional Characterization of 15 Novel Dense Granule Proteins in Toxoplasma gondii Using the CRISPR-Cas9 System Article Snippet: The transcriptional patterns of the main archetypal lineages (genotypes I, II, and III), cell cycle expression profiles , different developmental stages (oocysts, tachyzoites, and bradyzoites) , and during bradyzoite differentiation ( ) were analyzed using the Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St. Louis, MO, USA). Article Title: Impairment of both IRE1 expression and XBP1 activation is a hallmark of GCB DLBCL and contributes to tumor growth. Article Snippet: Data-mining from published microarray data sets Raw expression profiles (CEL files) were downloaded from the publicly available data-sets (GSE10846 36, GSE23501 37, GSE4097135, GSE56315 38) imported and normalized using RMA (Robust Multiarray Average) algorithm in Partek Genomics Suite 6.4 (Partek, St. Louis, MO, USA). Article Title: Functional Characterization of 17 Protein Serine/Threonine Phosphatases in Toxoplasma gondii Using CRISPR-Cas9 System Article Snippet: PSP gene expression analysis was performed using Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St Louis, MO, United States). Article Title: Nociceptor sensory neurons suppress neutrophil and γδ T cell responses in bacterial lung infections and lethal pneumonia Article Snippet: Microarray data were background corrected and normalized with the robust multiarray average (RMA) algorithm in GenePattern (Broad Institute). Article Title: Ex-vivo perfusion as a successful strategy for reduction of ischemia-reperfusion injury in prolonged muscle flap preservation - A gene expression study. Article Snippet: Introduction: With the introduction of vascularized composite allotransplantation (VCA) as new surgical technique, the need arose for strategies that could safely prolong graft preservation.. Ex-vivo machine perfusion is a promising technique and is currently applied in solid organ transplantation.. There is still limited evidence in the field of VCA and free flap transplantation. Article Title: Gingival tissue autophagy pathway gene expression profiles in periodontitis and aging. Article Snippet: © 2020 John Wiley & Sons A/S.. Published by John Wiley & Sons Ltd 1Department of Biomedical Sciences, School of Dental Medicine, University of Nevada Las Vegas, NV, USA 2Center for Oral Health Research, University of Kentucky, Lexington, KY, USA 3Department of Periodontology, College of Dentistry, University of Kentucky, Lexington, KY, USA 4Department of Statistics, College of Arts and Sciences, University of Kentucky, Lexington, KY, USA 5School of Dental Medicine, University of Puerto Rico, San Juan, PR, USA 6Caribbean Primate Research Center, University of Puerto Rico, Toa Baja, PR, USA Software:Article Title: TODRA , a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51 , and Enhances RAD51-Dependent DSB (Double Strand Break) Repair Article Snippet: Raw data was analyzed using the robust multiarray average (RMA) algorithm (Affymetrix Expression Console and Partek Genomics Suite 6.4)[ ]. Article Title: miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2 . Article Snippet: 2 Reversing epithelial-to-mesenchymal transition (EMT) in cancer cells has been widely considered as an approach to combat cancer progression and therapeutic resistance, but a limited number of broadly comprehensive investigations of microRNAs involved in this process have been conducted.. In this study, we screened a library of 1120 microRNA for their ability to transcriptionally activate the E-cadherin gene CDH1 in a promoter reporter assay as a measure of EMT reversal.. By this approach, we defined miR-520f as a novel EMT-reversing microRNA. miR-520f expression was sufficient to restore endogenous levels of E-cadherin in cancer cell lines exhibiting strong or intermediate mesenchymal phenotypes. Article Title: Functional Characterization of 15 Novel Dense Granule Proteins in Toxoplasma gondii Using the CRISPR-Cas9 System Article Snippet: The transcriptional patterns of the main archetypal lineages (genotypes I, II, and III), cell cycle expression profiles , different developmental stages (oocysts, tachyzoites, and bradyzoites) , and during bradyzoite differentiation ( ) were analyzed using the Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St. Louis, MO, USA). Article Title: Impairment of both IRE1 expression and XBP1 activation is a hallmark of GCB DLBCL and contributes to tumor growth. Article Snippet: Data-mining from published microarray data sets Raw expression profiles (CEL files) were downloaded from the publicly available data-sets (GSE10846 36, GSE23501 37, GSE4097135, GSE56315 38) imported and normalized using RMA (Robust Multiarray Average) algorithm in Partek Genomics Suite 6.4 (Partek, St. Louis, MO, USA). Article Title: Functional Characterization of 17 Protein Serine/Threonine Phosphatases in Toxoplasma gondii Using CRISPR-Cas9 System Article Snippet: PSP gene expression analysis was performed using Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St Louis, MO, United States). Article Title: Nociceptor sensory neurons suppress neutrophil and γδ T cell responses in bacterial lung infections and lethal pneumonia Article Snippet: Microarray data were background corrected and normalized with the robust multiarray average (RMA) algorithm in GenePattern (Broad Institute). Article Title: Ex-vivo perfusion as a successful strategy for reduction of ischemia-reperfusion injury in prolonged muscle flap preservation - A gene expression study. Article Snippet: Introduction: With the introduction of vascularized composite allotransplantation (VCA) as new surgical technique, the need arose for strategies that could safely prolong graft preservation.. Ex-vivo machine perfusion is a promising technique and is currently applied in solid organ transplantation.. There is still limited evidence in the field of VCA and free flap transplantation. Article Title: Gingival tissue autophagy pathway gene expression profiles in periodontitis and aging. Article Snippet: © 2020 John Wiley & Sons A/S.. Published by John Wiley & Sons Ltd 1Department of Biomedical Sciences, School of Dental Medicine, University of Nevada Las Vegas, NV, USA 2Center for Oral Health Research, University of Kentucky, Lexington, KY, USA 3Department of Periodontology, College of Dentistry, University of Kentucky, Lexington, KY, USA 4Department of Statistics, College of Arts and Sciences, University of Kentucky, Lexington, KY, USA 5School of Dental Medicine, University of Puerto Rico, San Juan, PR, USA 6Caribbean Primate Research Center, University of Puerto Rico, Toa Baja, PR, USA Derivative Assay:Article Title: TODRA , a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51 , and Enhances RAD51-Dependent DSB (Double Strand Break) Repair Article Snippet: Raw data was analyzed using the robust multiarray average (RMA) algorithm (Affymetrix Expression Console and Partek Genomics Suite 6.4)[ ]. Article Title: miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2 . Article Snippet: 2 Reversing epithelial-to-mesenchymal transition (EMT) in cancer cells has been widely considered as an approach to combat cancer progression and therapeutic resistance, but a limited number of broadly comprehensive investigations of microRNAs involved in this process have been conducted.. In this study, we screened a library of 1120 microRNA for their ability to transcriptionally activate the E-cadherin gene CDH1 in a promoter reporter assay as a measure of EMT reversal.. By this approach, we defined miR-520f as a novel EMT-reversing microRNA. miR-520f expression was sufficient to restore endogenous levels of E-cadherin in cancer cell lines exhibiting strong or intermediate mesenchymal phenotypes. Article Title: Functional Characterization of 15 Novel Dense Granule Proteins in Toxoplasma gondii Using the CRISPR-Cas9 System Article Snippet: The transcriptional patterns of the main archetypal lineages (genotypes I, II, and III), cell cycle expression profiles , different developmental stages (oocysts, tachyzoites, and bradyzoites) , and during bradyzoite differentiation ( ) were analyzed using the Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St. Louis, MO, USA). Article Title: Impairment of both IRE1 expression and XBP1 activation is a hallmark of GCB DLBCL and contributes to tumor growth. Article Snippet: Data-mining from published microarray data sets Raw expression profiles (CEL files) were downloaded from the publicly available data-sets (GSE10846 36, GSE23501 37, GSE4097135, GSE56315 38) imported and normalized using RMA (Robust Multiarray Average) algorithm in Partek Genomics Suite 6.4 (Partek, St. Louis, MO, USA). Article Title: Functional Characterization of 17 Protein Serine/Threonine Phosphatases in Toxoplasma gondii Using CRISPR-Cas9 System Article Snippet: PSP gene expression analysis was performed using Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St Louis, MO, United States). Article Title: Nociceptor sensory neurons suppress neutrophil and γδ T cell responses in bacterial lung infections and lethal pneumonia Article Snippet: Microarray data were background corrected and normalized with the robust multiarray average (RMA) algorithm in GenePattern (Broad Institute). Article Title: Ex-vivo perfusion as a successful strategy for reduction of ischemia-reperfusion injury in prolonged muscle flap preservation - A gene expression study. Article Snippet: Introduction: With the introduction of vascularized composite allotransplantation (VCA) as new surgical technique, the need arose for strategies that could safely prolong graft preservation.. Ex-vivo machine perfusion is a promising technique and is currently applied in solid organ transplantation.. There is still limited evidence in the field of VCA and free flap transplantation. Article Title: Gingival tissue autophagy pathway gene expression profiles in periodontitis and aging. Article Snippet: © 2020 John Wiley & Sons A/S.. Published by John Wiley & Sons Ltd 1Department of Biomedical Sciences, School of Dental Medicine, University of Nevada Las Vegas, NV, USA 2Center for Oral Health Research, University of Kentucky, Lexington, KY, USA 3Department of Periodontology, College of Dentistry, University of Kentucky, Lexington, KY, USA 4Department of Statistics, College of Arts and Sciences, University of Kentucky, Lexington, KY, USA 5School of Dental Medicine, University of Puerto Rico, San Juan, PR, USA 6Caribbean Primate Research Center, University of Puerto Rico, Toa Baja, PR, USA Microarray:Article Title: TODRA , a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51 , and Enhances RAD51-Dependent DSB (Double Strand Break) Repair Article Snippet: Raw data was analyzed using the robust multiarray average (RMA) algorithm (Affymetrix Expression Console and Partek Genomics Suite 6.4)[ ]. Article Title: miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2 . Article Snippet: 2 Reversing epithelial-to-mesenchymal transition (EMT) in cancer cells has been widely considered as an approach to combat cancer progression and therapeutic resistance, but a limited number of broadly comprehensive investigations of microRNAs involved in this process have been conducted.. In this study, we screened a library of 1120 microRNA for their ability to transcriptionally activate the E-cadherin gene CDH1 in a promoter reporter assay as a measure of EMT reversal.. By this approach, we defined miR-520f as a novel EMT-reversing microRNA. miR-520f expression was sufficient to restore endogenous levels of E-cadherin in cancer cell lines exhibiting strong or intermediate mesenchymal phenotypes. Article Title: Functional Characterization of 15 Novel Dense Granule Proteins in Toxoplasma gondii Using the CRISPR-Cas9 System Article Snippet: The transcriptional patterns of the main archetypal lineages (genotypes I, II, and III), cell cycle expression profiles , different developmental stages (oocysts, tachyzoites, and bradyzoites) , and during bradyzoite differentiation ( ) were analyzed using the Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St. Louis, MO, USA). Article Title: Impairment of both IRE1 expression and XBP1 activation is a hallmark of GCB DLBCL and contributes to tumor growth. Article Snippet: Data-mining from published microarray data sets Raw expression profiles (CEL files) were downloaded from the publicly available data-sets (GSE10846 36, GSE23501 37, GSE4097135, GSE56315 38) imported and normalized using RMA (Robust Multiarray Average) algorithm in Partek Genomics Suite 6.4 (Partek, St. Louis, MO, USA). Article Title: Functional Characterization of 17 Protein Serine/Threonine Phosphatases in Toxoplasma gondii Using CRISPR-Cas9 System Article Snippet: PSP gene expression analysis was performed using Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St Louis, MO, United States). Article Title: Nociceptor sensory neurons suppress neutrophil and γδ T cell responses in bacterial lung infections and lethal pneumonia Article Snippet: Microarray data were background corrected and normalized with the robust multiarray average (RMA) algorithm in GenePattern (Broad Institute). Article Title: Ex-vivo perfusion as a successful strategy for reduction of ischemia-reperfusion injury in prolonged muscle flap preservation - A gene expression study. Article Snippet: Introduction: With the introduction of vascularized composite allotransplantation (VCA) as new surgical technique, the need arose for strategies that could safely prolong graft preservation.. Ex-vivo machine perfusion is a promising technique and is currently applied in solid organ transplantation.. There is still limited evidence in the field of VCA and free flap transplantation. Article Title: Gingival tissue autophagy pathway gene expression profiles in periodontitis and aging. Article Snippet: © 2020 John Wiley & Sons A/S.. Published by John Wiley & Sons Ltd 1Department of Biomedical Sciences, School of Dental Medicine, University of Nevada Las Vegas, NV, USA 2Center for Oral Health Research, University of Kentucky, Lexington, KY, USA 3Department of Periodontology, College of Dentistry, University of Kentucky, Lexington, KY, USA 4Department of Statistics, College of Arts and Sciences, University of Kentucky, Lexington, KY, USA 5School of Dental Medicine, University of Puerto Rico, San Juan, PR, USA 6Caribbean Primate Research Center, University of Puerto Rico, Toa Baja, PR, USA Gene Expression:Article Title: TODRA , a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51 , and Enhances RAD51-Dependent DSB (Double Strand Break) Repair Article Snippet: Raw data was analyzed using the robust multiarray average (RMA) algorithm (Affymetrix Expression Console and Partek Genomics Suite 6.4)[ ]. Article Title: miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2 . Article Snippet: 2 Reversing epithelial-to-mesenchymal transition (EMT) in cancer cells has been widely considered as an approach to combat cancer progression and therapeutic resistance, but a limited number of broadly comprehensive investigations of microRNAs involved in this process have been conducted.. In this study, we screened a library of 1120 microRNA for their ability to transcriptionally activate the E-cadherin gene CDH1 in a promoter reporter assay as a measure of EMT reversal.. By this approach, we defined miR-520f as a novel EMT-reversing microRNA. miR-520f expression was sufficient to restore endogenous levels of E-cadherin in cancer cell lines exhibiting strong or intermediate mesenchymal phenotypes. Article Title: Functional Characterization of 15 Novel Dense Granule Proteins in Toxoplasma gondii Using the CRISPR-Cas9 System Article Snippet: The transcriptional patterns of the main archetypal lineages (genotypes I, II, and III), cell cycle expression profiles , different developmental stages (oocysts, tachyzoites, and bradyzoites) , and during bradyzoite differentiation ( ) were analyzed using the Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St. Louis, MO, USA). Article Title: Impairment of both IRE1 expression and XBP1 activation is a hallmark of GCB DLBCL and contributes to tumor growth. Article Snippet: Data-mining from published microarray data sets Raw expression profiles (CEL files) were downloaded from the publicly available data-sets (GSE10846 36, GSE23501 37, GSE4097135, GSE56315 38) imported and normalized using RMA (Robust Multiarray Average) algorithm in Partek Genomics Suite 6.4 (Partek, St. Louis, MO, USA). Article Title: Functional Characterization of 17 Protein Serine/Threonine Phosphatases in Toxoplasma gondii Using CRISPR-Cas9 System Article Snippet: PSP gene expression analysis was performed using Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St Louis, MO, United States). Article Title: Nociceptor sensory neurons suppress neutrophil and γδ T cell responses in bacterial lung infections and lethal pneumonia Article Snippet: Microarray data were background corrected and normalized with the robust multiarray average (RMA) algorithm in GenePattern (Broad Institute). Article Title: Ex-vivo perfusion as a successful strategy for reduction of ischemia-reperfusion injury in prolonged muscle flap preservation - A gene expression study. Article Snippet: Introduction: With the introduction of vascularized composite allotransplantation (VCA) as new surgical technique, the need arose for strategies that could safely prolong graft preservation.. Ex-vivo machine perfusion is a promising technique and is currently applied in solid organ transplantation.. There is still limited evidence in the field of VCA and free flap transplantation. Article Title: Gingival tissue autophagy pathway gene expression profiles in periodontitis and aging. Article Snippet: © 2020 John Wiley & Sons A/S.. Published by John Wiley & Sons Ltd 1Department of Biomedical Sciences, School of Dental Medicine, University of Nevada Las Vegas, NV, USA 2Center for Oral Health Research, University of Kentucky, Lexington, KY, USA 3Department of Periodontology, College of Dentistry, University of Kentucky, Lexington, KY, USA 4Department of Statistics, College of Arts and Sciences, University of Kentucky, Lexington, KY, USA 5School of Dental Medicine, University of Puerto Rico, San Juan, PR, USA 6Caribbean Primate Research Center, University of Puerto Rico, Toa Baja, PR, USA |